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Biophysics and Physicobiology

Volume 18, Issue / 2021
English Article   Japanese Article
  • Please note that metadata of J-type articlesare generated by machine-translation and the original texts are written in Japanese.

English Article Biphasic spatiotemporal regulation of GRB2 dynamics by p52SHC for transient RAS activation
Ryo Yoshizawa1,2, Nobuhisa Umeki1, Akihiro Yamamoto1, Masayuki Murata2, Yasushi Sako1
Biophysics and Physicobiology 18: 1-12, 2021.

English Article Expanding horizons of biosciences by light-control
Mikio Kataoka1, Takashi Nagata2,3
Biophysics and Physicobiology 18: 13-15, 2021.

English Article Deuteration Aiming for Neutron Scattering
Aya Okuda1, Rintaro Inoue1, Ken Morishima1, Tomohide Saio2, Yasuhiro Yunoki3, Maho Yagi-Utsumi3,4,5, Hirokazu Yagi3, Masahiro Shimizu1, Nobuhiro Sato1, Reiko Urade1, Koichi Kato3,4,5, Masaaki Sugiyama1
Biophysics and Physicobiology 18: 16-27, 2021.

English Article Antigen tests for COVID-19
Yuta Kyosei1, Sou Yamura1, Mayuri Namba1, Teruki Yoshimura2, Satoshi Watabe3, Etsuro Ito1,3,4
Biophysics and Physicobiology 18: 28-39, 2021.

English Article Light-induced difference FTIR spectroscopy of primate blue-sensitive visual pigment at 163 K
Shunpei Hanai1, Kota Katayama1,2, Hiroo Imai3, Hideki Kandori1,2
Biophysics and Physicobiology 18: 40-49, 2021.

English Article Structure elements can be predicted using the contact volume among protein residues
Yasumichi Takase1, Yoichi Yamazaki1, Yugo Hayashi1, Sachiko Toma-Fukai1, Hironari Kamikubo1,2
Biophysics and Physicobiology 18: 50-59, 2021.

English Article On the functioning mechanism of an ATP-driven molecular motor
Masahiro Kinoshita1,2
Biophysics and Physicobiology 18: 60-66, 2021.

English Article Application of fluorescent-based technology detecting protein-protein interactions to monitor the binding of hepatitis B virus X protein to DNA-damage-binding protein 1
Katsumi Omagari1, Kaori Asamitsu2, Yasuhito Tanaka1,3
Biophysics and Physicobiology 18: 67-77, 2021.

English Article DNA-binding function of c-Myb R2R3 around thermal denaturation temperature
Maki Kawasaki, Masayuki Oda
Biophysics and Physicobiology 18: 78-84, 2021.

English Article Effects of high-pressure treatment on the structure and function of myofibrils
Seine A. Shintani
Biophysics and Physicobiology 18: 85-95, 2021.

English Article A measure for the identification of preferred particle orientations in cryo-electron microscopy data : A simulation study
Ryota Kojima, Takashi Yoshidome
Biophysics and Physicobiology 18: 96-107, 2021.

English Article Role of Thr82 for the unique photochemistry of TAT rhodopsin
Teppei Sugimoto1, Kota Katayama1,2, Hideki Kandori1,2
Biophysics and Physicobiology 18: 108-115, 2021.

English Article DNA nanotechnology provides an avenue for the construction of programmable dynamic molecular systems
Yusuke Sato1,2, Yuki Suzuki1,3
Biophysics and Physicobiology 18: 116-126, 2021.

English Article Spectroscopic approach for exploring structure and function of photoreceptor proteins
Masashi Unno1, Yuu Hirose2, Masaki Mishima3, Takashi Kikukawa4, Tomotsumi Fujisawa1, Tatsuya Iwata5, Jun Tamogami6
Biophysics and Physicobiology 18: 127-130, 2021.

English Article Transfer entropy dependent on distance among agents in quantifying leader-follower relationships
Udoy S.Basak1,2, Sulimon Sattari3, Motaleb Hossain3,4, Kazuki Horikawa5, Tamiki Komatsuzaki1,3,6,7
Biophysics and Physicobiology 18: 131-144, 2021.

English Article Glycine insertion modulates the fluorescence properties of Aequorea victoria green fluorescent protein and its variants in their ambient environment
Takamitsu J Morikawa1,2, Masayoshi Nishiyama3, Keiko Yoshizawa1, Hideaki Fujita1,4, Tomonobu M Watanabe1,4
Biophysics and Physicobiology 18: 145-158, 2021.

English Article Limitations of the ABEGO-based backbone design : ambiguity between αα-corner and αα-hairpin
Koya Sakuma1,2
Biophysics and Physicobiology 18: 159-167, 2021.

English Article Structural basis for Ca2+-dependent catalysis of a cutinase-like enzyme and its engineering : application to enzymatic PET depolymerization
Masayuki Oda
Biophysics and Physicobiology 18: 168-176, 2021.

English Article Structure of a retinal chromophore of dark-adapted middle rhodopsin as studied by solid-state nuclear magnetic resonance spectroscopy
Izuru Kawamura1,2, Hayato Seki1, Seiya Tajima2, Yoshiteru Makino1,5, Arisu Shigeta1, Takashi Okitsu3, Akimori Wada3, Akira Naito1, Yuki Sudo4
Biophysics and Physicobiology 18: 177-185, 2021.

English Article Biochemical and crystallographic studies of monomeric and dimeric bovine cytochrome c oxidase
Kyoko Shinzawa-Itoh, Kazumasa Muramoto
Biophysics and Physicobiology 18: 186-195, 2021.

English Article Estimation of the relative contributions to the electronic energy transfer rates based on Forster theory : The case of C-phycocyanin chromophores
Kenji Mishima1, Mitsuo Shoji1,2, Yasufumi Umena3, Mauro Boero4, Yasuteru Shigeta1
Biophysics and Physicobiology 18: 196-214, 2021.

English Article Microsecond molecular dynamics suggest that a non-synonymous mutation, frequently observed in patients with mild symptoms in Tokyo, alters dynamics of the SARS-CoV-2 main protease
Daisuke Kuroda1,2,3, Kouhei Tsumoto1,2,3,4
Biophysics and Physicobiology 18: 215-222, 2021.

English Article Improve publishing procedures of Biophysics and Physicobiology
Haruki Nakamura
Biophysics and Physicobiology 18: 223-223, 2021.

English Article Greetings from the President of Biophysical Society of Japan : Traditionally open culture for fostering creative biophysics
Hiroyuki Noji
Biophysics and Physicobiology 18: 224-225, 2021.

English Article Current status of structure-based drug repurposing against COVID-19 by targeting SARS-CoV-2 proteins
Atsushi Hijikata1, Clara Shionyu1, Setsu Nakae1, Masafumi Shionyu1, Motonori Ota2, Shigehiko Kanaya3, Tsuyoshi Shirai1
Biophysics and Physicobiology 18: 226-240, 2021.

English Article Japan-US symposium on cytoskeletal motor proteins and their associated proteins
Kumiko Hayashi1, Shinsuke Niwa2,3
Biophysics and Physicobiology 18: 241-243, 2021.

English Article Application of quantitative cell imaging using label-free optical diffraction tomography
Chan-Gi Pack1,2
Biophysics and Physicobiology 18: 244-253, 2021.

English Article Collective pattern formations of animals in active matter physics
Takuma Sugi1, Hiroshi Ito2, Ken H. Nagai3
Biophysics and Physicobiology 18: 254-262, 2021.

English Article Information biophysics of gradient sensing in organisms
Akihiko Ishijima1, Yasushi Okada2,3
Biophysics and Physicobiology 18: 263-264, 2021.

English Article Technical development and sharing of high-resolution cryo-electron microscopes
Haruki Nakamura1, Masahide Kikkawa2, Takeshi Murata3
Biophysics and Physicobiology 18: 265-266, 2021.

English Article Beyond multi-disciplinary and cross-scale analyses of the cyanobacterial circadian clock system
Shuji Akiyama1,2, Hironari Kamikubo3
Biophysics and Physicobiology 18: 267-268, 2021.

English Article Increasing complexity of primitive compartments
Tony Z. Jia1,2, Yutetsu Kuruma1,3,4
Biophysics and Physicobiology 18: 269-273, 2021.

English Article The insights into calcium ion selectivity provided by ancestral prokaryotic ion channels
Katsumasa Irie1,2
Biophysics and Physicobiology 18: 274-283, 2021.

English Article Protein hydration and its freezing phenomena : Toward the application for cell freezing and frozen food storage
Naoki Yamamoto1, Masahiro Nakanishi2, Robin Rajan3, Hiroshi Nakagawa4
Biophysics and Physicobiology 18: 284-288, 2021.

English Article Announcement of BPPB paper awards 2021
Haruki Nakamura
Biophysics and Physicobiology 18: 289-289, 2021.

English Article Analysis of the mechanism of synaptic integration focusing on the charge held in the spine
Takayoshi Tsubo
Biophysics and Physicobiology 18: 290-304, 2021.

English Article Binding free energy of protein/ligand complexes calculated using dissociation Parallel Cascade Selection Molecular Dynamics and Markov state model
Hiroaki Hata1, Duy Phuoc Tran1, Mohamed Marzouk Sobeh1,2, Akio Kitao1
Biophysics and Physicobiology 18: 305-316, 2021.

English Article Unique Cl- pump rhodopsin with close similarity to H+ pump rhodopsin
Takashi Kikukawa
Biophysics and Physicobiology 18: 317-326, 2021.